- Mac xcode command line tools 8.3 how to#
- Mac xcode command line tools 8.3 install#
- Mac xcode command line tools 8.3 license#
Mac xcode command line tools 8.3 install#
Install it on your system, see the sf installation instructions here.įor Mac users only, Xcode command line tools is required.
One of Monocle 3's dependencies requires a package called gdal. Installation of package ‘sf’ had non-zero exit status Solution: * removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/sf’ If you discover new difficulties, please open an issue on Github describingĮrrors involving Gdal: Example error messages: configure: error: gdal-config not found or not executable.ĮRROR: configuration failed for package ‘sf’ Library ( monocle3 ) Installation troubleshootingīelow are a few of the most common errors that users encounter when installing To ensure that Monocle 3 was installed correctly, start a new R session and If you wish to install the develop branch of monocle3, execute: devtools :: install_github ( 'cole-trapnell-lab/monocle3', ref = "develop" ) Testing the installation Now, install monocle3 through the cole-trapnell-lab GitHub, execute: install.packages ( "devtools" ) devtools :: install_github ( 'cole-trapnell-lab/leidenbase' ) devtools :: install_github ( 'cole-trapnell-lab/monocle3' ) Next, install a few Bioconductor dependencies that aren't automatically installed: BiocManager :: install ( c ( 'BiocGenerics', 'DelayedArray', 'DelayedMatrixStats', 'limma', 'S4Vectors', 'SingleCellExperiment', 'SummarizedExperiment', 'batchelor', 'Matrix.utils' )) To install Bioconductor, open R and run: if ( ! requireNamespace ( "BiocManager", quietly = TRUE )) install.packages ( "BiocManager" ) BiocManager :: install ( version = "3.10" ) Monocle3 0.2.3 or higher to have access to the latest features. I was using it because I expected it to be an easier way to install a package, but it is turning out to more trouble than it's worth.Computing environment. I think I'm just about done trying to get Macports to work.
The Command Line Tools is a select list, but only this one item is in it. What I have is:Ĭommand line tools: from Xcode, Xcode menu : Preferences : Locations tab, setting Command Line Tools: Xcode 8.3.2 (8E2002) I have Sierra, and a very recently installed Xcode, so I'm not sure what good a reinstall of Xcode would do anyway (it's already a pretty new install).
Mac xcode command line tools 8.3 how to#
In any event, I don't know how to uninstall them without uninstalling all of Xcode, in order to try again. A search on the internet implied that this often happens when you already have the command line tools. I left it there for an hour when I first tried (after the port command said I didn't have Xcode tools). Then a progress popup appears, which says "Finding software".
Mac xcode command line tools 8.3 license#
So I click the "Install" button, and accept the license that comes up. Would you like to install them now?" That sounds like I don't have the tools. If xcode-select -p tells you the path of the tools, but that doesn't prove that you have them, then what does prove it?Ī popup comes up saying "The xcode-select command requires the command line developer tools. Yes, I was using -p to print, not -s to set. Applications/Xcode.app/Contents/DeveloperĪlso, I cannot fill in the maintainer in the CC because the port info command claims this port doesn't exist, even though trying to install the port seems to try to install the port (as seen above):Ĭhristopher-Cookes-MacBook-Air:~ chriscooke$ port info -maintainer dnsiff Warning: Install them by running `xcode-select -install'.Įrror: Failed to configure dsniff, consult /opt/local/var/macports/build/_opt_local_var_macports_sources_macports_release_tarballs_ports_net_dsniff/dsniff/work/dsniff-2.4/config.logĮrror: Failed to configure dsniff: configure failure: command execution failedĮrror: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_macports_release_tarballs_ports_net_dsniff/dsniff/main.log for details.īut the command line tools are installed:Ĭhristopher-Cookes-MacBook-Air:~ chriscooke$ xcode-select -p Warning: The Xcode Command Line Tools don't appear to be installed most ports will likely fail to build. Trying to install "dsniff" claims that Xcode command line tools are not installed.Ĭhristopher-Cookes-MacBook-Air:~ chriscooke$ sudo port install dsniff